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Chicken_13_mag_91

Identifiers
BioSample: SAMEA7202194; SRA: ERS4962407
Organism
Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Attributes
collection datenot collected
broad-scale environmental contextGallus gallus domesticus
local-scale environmental contextCaeca
environmental mediumGut contents
geographic locationUnited Kingdom
investigation typemetagenome
isolation sourcemetagenome
project namePRJEB33338
sample nameChicken_13_mag_91
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2020-09-09T17:06:41Z
ENA-LAST-UPDATE2020-08-21T13:42:39Z
External IdSAMEA7202194
INSDC center nameTHE ROSLIN INSTITUTE
INSDC first public2020-09-09T17:06:41Z
INSDC last update2020-08-21T13:42:39Z
INSDC statuspublic
Submitter IdChicken_13_mag_91
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMetabat2
binning parameters-v -m 2000
binning softwareMetabat2
common nameEscherichia coli
completeness score98.86
completeness softwareCheckM
contamination score0.17
geographic location (latitude)55.86513
geographic location (longitude)-3.197356
metagenomic sourceGallus gallus
sample derived fromERS3558288
scientific_nameEscherichia coli
sequencing methodIllumina NovaSeq 6000
taxonomic identity markerCheckM_markers
Description

This sample represents a metagenome assembled genome from the metagenomic sample ERS3558288

BioProject
PRJEB33338 Metagenomics of chicken cecal contents
Retrieve all samples from this project

Submission
EBI; 2020-09-11
Accession:
SAMEA7202194
ID:
16099552

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