Chicken_14_mag_96

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Result Filters

Organism: Lactobacillus gallinarum
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

collection date	not collected
broad-scale environmental context	Gallus gallus domesticus
local-scale environmental context	Caeca
environmental medium	Gut contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB33338
sample name	Chicken_14_mag_96
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-09-08T17:06:11Z
ENA-LAST-UPDATE	2020-08-21T13:42:40Z
External Id	SAMEA7202211
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2020-09-08T17:06:11Z
INSDC last update	2020-08-21T13:42:40Z
INSDC status	public
Submitter Id	Chicken_14_mag_96
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Metabat2
binning parameters	-v -m 2000
binning software	Metabat2
common name	Lactobacillus gallinarum
completeness score	89.38
completeness software	CheckM
contamination score	0.39
geographic location (latitude)	55.86513
geographic location (longitude)	-3.197356
metagenomic source	Gallus gallus
sample derived from	ERS3558289
scientific_name	Lactobacillus gallinarum
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	CheckM_markers

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS3558289

BioProject: PRJEB33338 Metagenomics of chicken cecal contents
Retrieve all samples from this project

Chicken_14_mag_96
Chicken_14_mag_96

biosample
Chicken_20_mag_27
Chicken_20_mag_27

biosample
Danio rerio ribonuclease P/MRP 38 subunit (rpp38), mRNA
Danio rerio ribonuclease P/MRP 38 subunit (rpp38), mRNA
gi|315113849|ref|NM_001002525.2|

Nucleotide
Bacillus subtilis strain CH109a_4T scaffold5.1, whole genome shotgun sequence
Bacillus subtilis strain CH109a_4T scaffold5.1, whole genome shotgun sequence
gi|1732945577|gb|VTEK01000005.1||gn :VTEK01|scaffold5.1

Nucleotide
Homo sapiens cell division cycle 14B (CDC14B), transcript variant 1, mRNA
Homo sapiens cell division cycle 14B (CDC14B), transcript variant 1, mRNA
gi|1676440379|ref|NM_003671.5|

Nucleotide

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