Chicken_18_mag_139

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Result Filters

Organism: Lachnoclostridium sp. An76
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium; unclassified Lachnoclostridium

Attributes

collection date	not collected
broad-scale environmental context	Gallus gallus domesticus
local-scale environmental context	Caeca
environmental medium	Gut contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB33338
sample name	Chicken_18_mag_139
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-09-09T17:06:41Z
ENA-LAST-UPDATE	2020-08-21T14:56:37Z
External Id	SAMEA7202288
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2020-09-09T17:06:41Z
INSDC last update	2020-08-21T14:56:37Z
INSDC status	public
Submitter Id	Chicken_18_mag_139
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Metabat2
binning parameters	-v -m 2000
binning software	Metabat2
common name	Lachnoclostridium sp. An76
completeness score	81.27
completeness software	CheckM
contamination score	0.58
geographic location (latitude)	55.86513
geographic location (longitude)	-3.197356
metagenomic source	Gallus gallus
sample derived from	ERS3558293
scientific_name	Lachnoclostridium sp. An76
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	CheckM_markers

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS3558293

BioProject: PRJEB33338 Metagenomics of chicken cecal contents
Retrieve all samples from this project

Chicken_18_mag_139
Chicken_18_mag_139

biosample
epigen isoform 4 precursor [Homo sapiens]
epigen isoform 4 precursor [Homo sapiens]
gi|401782587|ref|NP_001257921.1|

Protein
Chicken_15_mag_58
Chicken_15_mag_58

biosample
Coassembly_mag_456
Coassembly_mag_456

biosample

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