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Chicken_24_mag_75

Identifiers
BioSample: SAMEA7202403; SRA: ERS4962616
Organism
Faecalibacterium sp. An121
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium; unclassified Faecalibacterium
Attributes
collection datenot collected
broad-scale environmental contextGallus gallus domesticus
local-scale environmental contextCaeca
environmental mediumGut contents
geographic locationUnited Kingdom
investigation typemetagenome
isolation sourcemetagenome
project namePRJEB33338
sample nameChicken_24_mag_75
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2020-09-08T17:06:11Z
ENA-LAST-UPDATE2020-08-21T15:36:28Z
External IdSAMEA7202403
INSDC center nameTHE ROSLIN INSTITUTE
INSDC first public2020-09-08T17:06:11Z
INSDC last update2020-08-21T15:36:28Z
INSDC statuspublic
Submitter IdChicken_24_mag_75
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMetabat2
binning parameters-v -m 2000
binning softwareMetabat2
common nameFaecalibacterium sp. An121
completeness score96.39
completeness softwareCheckM
contamination score0.31
geographic location (latitude)55.86513
geographic location (longitude)-3.197356
metagenomic sourceGallus gallus
sample derived fromERS3558299
scientific_nameFaecalibacterium sp. An121
sequencing methodIllumina NovaSeq 6000
taxonomic identity markerCheckM_markers
Description

This sample represents a metagenome assembled genome from the metagenomic sample ERS3558299

BioProject
PRJEB33338 Metagenomics of chicken cecal contents
Retrieve all samples from this project

Submission
EBI; 2020-09-09
Accession:
SAMEA7202403
ID:
16087896

BioProject Nucleotide

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