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Chicken_5_mag_154

Identifiers
BioSample: SAMEA7202433; SRA: ERS4962646
Organism
Clostridium sp. CAG:678
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; unclassified Clostridium
Attributes
collection datenot collected
broad-scale environmental contextGallus gallus domesticus
local-scale environmental contextCaeca
environmental mediumGut contents
geographic locationUnited Kingdom
investigation typemetagenome
isolation sourcemetagenome
project namePRJEB33338
sample nameChicken_5_mag_154
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2020-09-08T17:06:11Z
ENA-LAST-UPDATE2020-08-21T15:44:35Z
External IdSAMEA7202433
INSDC center nameTHE ROSLIN INSTITUTE
INSDC first public2020-09-08T17:06:11Z
INSDC last update2020-08-21T15:44:35Z
INSDC statuspublic
Submitter IdChicken_5_mag_154
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMetabat2
binning parameters-v -m 2000
binning softwareMetabat2
common nameClostridium sp. CAG_678
completeness score97.32
completeness softwareCheckM
contamination score0
geographic location (latitude)55.86513
geographic location (longitude)-3.197356
metagenomic sourceGallus gallus
sample derived fromERS3558280
scientific_nameClostridium sp. CAG:678
sequencing methodIllumina NovaSeq 6000
taxonomic identity markerCheckM_markers
Description

This sample represents a metagenome assembled genome from the metagenomic sample ERS3558280

BioProject
PRJEB33338 Metagenomics of chicken cecal contents
Retrieve all samples from this project

Submission
EBI; 2020-09-09
Accession:
SAMEA7202433
ID:
16087913

BioProject Nucleotide

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