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Chicken_6_mag_92

Identifiers
BioSample: SAMEA7202448; SRA: ERS4962661
Organism
Eubacterium sp. ER2
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; unclassified Eubacterium (in: firmicutes)
Attributes
collection datenot collected
broad-scale environmental contextGallus gallus domesticus
local-scale environmental contextCaeca
environmental mediumGut contents
geographic locationUnited Kingdom
investigation typemetagenome
isolation sourcemetagenome
project namePRJEB33338
sample nameChicken_6_mag_92
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2020-09-08T17:06:11Z
ENA-LAST-UPDATE2020-08-21T15:48:27Z
External IdSAMEA7202448
INSDC center nameTHE ROSLIN INSTITUTE
INSDC first public2020-09-08T17:06:11Z
INSDC last update2020-08-21T15:48:27Z
INSDC statuspublic
Submitter IdChicken_6_mag_92
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMetabat2
binning parameters-v -m 2000
binning softwareMetabat2
common nameEubacterium sp. ER2
completeness score91.08
completeness softwareCheckM
contamination score1.85
geographic location (latitude)55.86513
geographic location (longitude)-3.197356
metagenomic sourceGallus gallus
sample derived fromERS3558281
scientific_nameEubacterium sp. ER2
sequencing methodIllumina NovaSeq 6000
taxonomic identity markerCheckM_markers
Description

This sample represents a metagenome assembled genome from the metagenomic sample ERS3558281

BioProject
PRJEB33338 Metagenomics of chicken cecal contents
Retrieve all samples from this project

Submission
EBI; 2020-09-09
Accession:
SAMEA7202448
ID:
16087922

BioProject Nucleotide

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