Coassembly_mag_450

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Result Filters

Organism: uncultured Eggerthellaceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Coriobacteriia; Eggerthellales; Eggerthellaceae; environmental samples

Attributes

collection date	not collected
broad-scale environmental context	Gallus gallus domesticus
local-scale environmental context	Caeca
environmental medium	Gut contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB33338
sample name	Coassembly_mag_450
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-09-09T17:06:41Z
ENA-LAST-UPDATE	2020-09-07T15:43:36Z
External Id	SAMEA7202548
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2020-09-09T17:06:41Z
INSDC last update	2020-09-07T15:43:36Z
INSDC status	public
Submitter Id	Coassembly_mag_450
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Metabat2
binning parameters	-v -m 2000
binning software	Metabat2
common name	uncultured Eggerthellaceae bacterium
completeness score	88.73
completeness software	CheckM
contamination score	1.41
geographic location (latitude)	55.86513
geographic location (longitude)	-3.197356
metagenomic source	Gallus gallus
sample derived from	ERS4921402
scientific_name	uncultured Eggerthellaceae bacterium
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	CheckM_markers

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS4921402

BioProject: PRJEB33338 Metagenomics of chicken cecal contents
Retrieve all samples from this project

Coassembly_mag_450
Coassembly_mag_450

biosample
Chicken_13_mag_158
Chicken_13_mag_158

biosample
Chicken_12_mag_162
Chicken_12_mag_162

biosample
Fistularia commersonii isolate TSs1 cytochrome b (cytb) gene, partial cds; mitoc...
Fistularia commersonii isolate TSs1 cytochrome b (cytb) gene, partial cds; mitochondrial
gi|284448910|gb|GQ902023.1|

Nucleotide
Homo sapiens mRNA for RAB6A, member RAS oncogene family isoform a variant, clone...
Homo sapiens mRNA for RAB6A, member RAS oncogene family isoform a variant, clone: FCC126F01
gi|62898833|dbj|AK223551.1|

Nucleotide

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