RUG30035

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Result Filters

Organism: uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; environmental samples

Attributes

collection date	not collected
broad-scale environmental context	Cervus elaphus
local-scale environmental context	Rumen
environmental medium	Rumen contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB34458
sample name	Red_deer_1_mag_5
ENA first public	2021-02-12
ENA last update	2021-02-11
ENA-CHECKLIST	ERC000047
External Id	SAMEA8030144
INSDC center alias	THE ROSLIN INSTITUTE
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2021-02-12T17:28:52Z
INSDC last update	2021-02-11T16:06:11Z
INSDC status	public
Submitter Id	Red_deer_1_mag_5
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	IDBA-UD
binning parameters	-v -m 2000
binning software	Metabat2
common name	uncultured Alphaproteobacteria bacterium
completeness score	80.93
completeness software	CheckM
contamination score	0
geographic location (latitude)	57.0607
geographic location (longitude)	-3.6066
metagenomic source	Cervus elaphus
sample derived from	ERS3750162
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach