RUG30070

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Result Filters

Organism: Bacteroidales bacterium UBA1184
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; unclassified Bacteroidales

Attributes

collection date	not collected
broad-scale environmental context	Cervus elaphus
local-scale environmental context	Rumen
environmental medium	Rumen contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB34458
sample name	Red_deer_3_mag_103
ENA first public	2021-02-12
ENA last update	2021-02-11
ENA-CHECKLIST	ERC000047
External Id	SAMEA8030179
INSDC center alias	THE ROSLIN INSTITUTE
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2021-02-12T17:28:52Z
INSDC last update	2021-02-11T16:06:12Z
INSDC status	public
Submitter Id	Red_deer_3_mag_103
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	IDBA-UD
binning parameters	-v -m 2000
binning software	Metabat2
common name	Bacteroidales bacterium UBA1184
completeness score	98.66
completeness software	CheckM
contamination score	0.72
geographic location (latitude)	57.0607
geographic location (longitude)	-3.6066
metagenomic source	Cervus elaphus
sample derived from	ERS3750164
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS3750164

BioProject: PRJEB34458 Metagenomic sequencing of the rumen of 4 ruminant species
Retrieve all samples from this project

RUG30070
RUG30070

biosample
sugar-binding domain-containing protein [Microbacterium terrae]
sugar-binding domain-containing protein [Microbacterium terrae]
gi|2225608387|ref|WP_245617921.1|

Protein
Mus musculus tripartite motif-containing 31, mRNA (cDNA clone MGC:37625 IMAGE:49...
Mus musculus tripartite motif-containing 31, mRNA (cDNA clone MGC:37625 IMAGE:4990292), complete cds
gi|20071872|gb|BC026666.1|

Nucleotide
UI-M-BH2.2-aql-e-06-0-UI.r1 NIH_BMAP_M_S3.2 Mus musculus cDNA clone UI-M-BH2.2-a...
UI-M-BH2.2-aql-e-06-0-UI.r1 NIH_BMAP_M_S3.2 Mus musculus cDNA clone UI-M-BH2.2-aql-e-06-0-UI 5', mRNA sequence
gi|19393892|gnl|dbEST|11636760|gb|B 40.1|

Nucleotide

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