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RUG30131

Identifiers
BioSample: SAMEA8030240; SRA: ERS5717526
Organism
uncultured Ruminococcus sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus; environmental samples
Attributes
collection datenot collected
broad-scale environmental contextCervus elaphus
local-scale environmental contextRumen
environmental mediumRumen contents
geographic locationUnited Kingdom
investigation typemetagenome
isolation sourcemetagenome
project namePRJEB34458
sample nameRed_deer_4_mag_106
ENA first public2021-02-12
ENA last update2021-02-11
ENA-CHECKLISTERC000047
External IdSAMEA8030240
INSDC center aliasTHE ROSLIN INSTITUTE
INSDC center nameTHE ROSLIN INSTITUTE
INSDC first public2021-02-12T17:28:52Z
INSDC last update2021-02-11T16:06:13Z
INSDC statuspublic
Submitter IdRed_deer_4_mag_106
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareIDBA-UD
binning parameters-v -m 2000
binning softwareMetabat2
common nameuncultured Ruminococcus sp.
completeness score87.16
completeness softwareCheckM
contamination score3.69
geographic location (latitude)57.0607
geographic location (longitude)-3.6066
metagenomic sourceCervus elaphus
sample derived fromERS3750165
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenome assembled genome from the metagenomic sample ERS3750165

BioProject
PRJEB34458 Metagenomic sequencing of the rumen of 4 ruminant species
Retrieve all samples from this project

Submission
EBI; 2021-02-17
Accession:
SAMEA8030240
ID:
17962343

BioProject Nucleotide

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