RUG30244

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Result Filters

Organism: uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples

Attributes

collection date	not collected
broad-scale environmental context	Rangifer tarandus
local-scale environmental context	Rumen
environmental medium	Rumen contents
geographic location	Finland
investigation type	metagenome
isolation source	metagenome
project name	PRJEB34458
sample name	Reindeer_1_mag_96
ENA first public	2021-02-12
ENA last update	2021-02-11
ENA-CHECKLIST	ERC000047
External Id	SAMEA8030353
INSDC center alias	THE ROSLIN INSTITUTE
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2021-02-12T17:28:52Z
INSDC last update	2021-02-11T16:06:16Z
INSDC status	public
Submitter Id	Reindeer_1_mag_96
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	IDBA-UD
binning parameters	-v -m 2000
binning software	Metabat2
common name	uncultured Lachnospiraceae bacterium
completeness score	96.78
completeness software	CheckM
contamination score	6.86
geographic location (latitude)	67.9222
geographic location (longitude)	26.5046
metagenomic source	Rangifer tarandus
sample derived from	ERS3750160
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS3750160

BioProject: PRJEB34458 Metagenomic sequencing of the rumen of 4 ruminant species
Retrieve all samples from this project

RUG30244
RUG30244

biosample
RUG30070
RUG30070

biosample
sugar-binding domain-containing protein [Microbacterium terrae]
sugar-binding domain-containing protein [Microbacterium terrae]
gi|2225608387|ref|WP_245617921.1|

Protein
Mus musculus tripartite motif-containing 31, mRNA (cDNA clone MGC:37625 IMAGE:49...
Mus musculus tripartite motif-containing 31, mRNA (cDNA clone MGC:37625 IMAGE:4990292), complete cds
gi|20071872|gb|BC026666.1|

Nucleotide
UI-M-BH2.2-aql-e-06-0-UI.r1 NIH_BMAP_M_S3.2 Mus musculus cDNA clone UI-M-BH2.2-a...
UI-M-BH2.2-aql-e-06-0-UI.r1 NIH_BMAP_M_S3.2 Mus musculus cDNA clone UI-M-BH2.2-aql-e-06-0-UI 5', mRNA sequence
gi|19393892|gnl|dbEST|11636760|gb|B 40.1|

Nucleotide

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