0.2_20180319_Bin_4_sub_1

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Result Filters

Organism: uncultured SAR86 cluster bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Gammaproteobacteria incertae sedis; SAR86 cluster; environmental samples

Attributes

collection date	2018-03-19
broad-scale environmental context	marine biome [ENVO:00000447]
local-scale environmental context	microbial feature [ENVO:00002150]
environmental medium	coastal sea water [ENVO:00002150]
geographic location	North Sea
investigation type	metagenome-assembled genome
isolation source	sea water
project name	2018 Helgoland Spring Bloom Metagenomes
sample name	0.2_20180319_Bin_4_sub_1
ENA first public	2021-04-07
ENA last update	2021-04-01
ENA-CHECKLIST	ERC000047
External Id	SAMEA8498393
INSDC center alias	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC center name	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC first public	2021-04-07T01:08:08Z
INSDC last update	2021-04-01T14:55:34Z
INSDC status	public
Submitter Id	0.2_20180319_Bin_4_sub_1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes version: 3.11.1
binning parameters	anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software	CONCOCT, refined with dastool and manually with anvi'o 6.2
completeness score	63.87
completeness software	checkM v1.1.3
contamination score	1.8
geographic location (latitude)	54.19
geographic location (longitude)	7.9
metagenomic source	marine metagenome
sample derived from	ERS4821117
sequencing method	Illumina HiSeq2500
taxonomic identity marker	multi-marker approach (GTDB-tk v1.03, GTDB v95)

Description: This sample represents a MAG derived from the metagenomic sample ERS4821117 and assembly ERZ1764443 - 2018-03-19_0.2_micron

0.2_20180319_Bin_4_sub_1
0.2_20180319_Bin_4_sub_1

biosample
0.2_20180417_Bin_132_1
0.2_20180417_Bin_132_1

biosample
wf64a03.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:2360332 3', mRNA se...
wf64a03.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:2360332 3', mRNA sequence
gi|5396510|gnl|dbEST|2875704|gb|AI8 .1|

Nucleotide
Thioalkalivibrio sp. ALE23 F573DRAFT_scaffold00051.51, whole genome shotgun sequ...
Thioalkalivibrio sp. ALE23 F573DRAFT_scaffold00051.51, whole genome shotgun sequence
gi|484084818|ref|NZ_KB900081.1||gnl NZ_ARKM01|F573DRAFT_scaffold00051.51

Nucleotide
Thioalkalivibrio sp. ALE23 F573DRAFT_scaffold00062.62, whole genome shotgun sequ...
Thioalkalivibrio sp. ALE23 F573DRAFT_scaffold00062.62, whole genome shotgun sequence
gi|484084887|ref|NZ_KB900092.1||gnl NZ_ARKM01|F573DRAFT_scaffold00062.62

Nucleotide

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