0.2_20180517_Bin_163_sub_1

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Result Filters

Organism: uncultured Rhodobacteraceae bacterium
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; environmental samples

Attributes

collection date	2018-05-17
broad-scale environmental context	marine biome [ENVO:00000447]
local-scale environmental context	microbial feature [ENVO:00002150]
environmental medium	coastal sea water [ENVO:00002150]
geographic location	North Sea
investigation type	metagenome-assembled genome
isolation source	sea water
project name	2018 Helgoland Spring Bloom Metagenomes
sample name	0.2_20180517_Bin_163_sub_1
ENA first public	2021-04-07
ENA last update	2021-04-01
ENA-CHECKLIST	ERC000047
External Id	SAMEA8498487
INSDC center alias	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC center name	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC first public	2021-04-07T01:08:08Z
INSDC last update	2021-04-01T14:55:35Z
INSDC status	public
Submitter Id	0.2_20180517_Bin_163_sub_1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes version: 3.11.1
binning parameters	anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software	CONCOCT, refined with dastool and manually with anvi'o 6.2
completeness score	91.55
completeness software	checkM v1.1.3
contamination score	0.59
geographic location (latitude)	54.19
geographic location (longitude)	7.9
metagenomic source	marine metagenome
sample derived from	ERS4821131
sequencing method	Illumina HiSeq2500
taxonomic identity marker	multi-marker approach (GTDB-tk v1.03, GTDB v95)

Description: This sample represents a MAG derived from the metagenomic sample ERS4821131 and assembly ERZ1764471 - 2018-05-17_0.2_micron

0.2_20180517_Bin_163_sub_1
0.2_20180517_Bin_163_sub_1

biosample
3_20180417_Bin_20180417_Bin_145_1
3_20180417_Bin_20180417_Bin_145_1

biosample
3_20180529_Bin_METABAT_20_1
3_20180529_Bin_METABAT_20_1

biosample
0.2_20180319_Bin_MAXBIN_122_1
0.2_20180319_Bin_MAXBIN_122_1

biosample
zf62a03.r1 Soares retina N2b4HR Homo sapiens cDNA clone IMAGE:381484 5', mRNA se...
zf62a03.r1 Soares retina N2b4HR Homo sapiens cDNA clone IMAGE:381484 5', mRNA sequence
gi|1548625|gnl|dbEST|682062|gb|AA05 1|

Nucleotide

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