3_20180529_Bin_20180529_Bin_53_sub_1

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Result Filters

Organism: uncultured Pseudomonadales bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; environmental samples

Attributes

collection date	2018-05-29
broad-scale environmental context	marine biome [ENVO:00000447]
local-scale environmental context	microbial feature [ENVO:00002150]
environmental medium	coastal sea water [ENVO:00002150]
geographic location	North Sea
investigation type	metagenome-assembled genome
isolation source	sea water
project name	2018 Helgoland Spring Bloom Metagenomes
sample name	3_20180529_Bin_20180529_Bin_53_sub_1
ENA first public	2021-04-07
ENA last update	2021-04-01
ENA-CHECKLIST	ERC000047
External Id	SAMEA8498585
INSDC center alias	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC center name	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC first public	2021-04-07T01:08:08Z
INSDC last update	2021-04-01T14:55:36Z
INSDC status	public
Submitter Id	3_20180529_Bin_20180529_Bin_53_sub_1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT v1.2.9
binning parameters	anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software	CONCOCT, refined with dastool and manually with anvi'o 6.2
completeness score	92.65
completeness software	checkM v1.1.3
contamination score	1.12
geographic location (latitude)	54.19
geographic location (longitude)	7.9
metagenomic source	marine metagenome
sample derived from	ERS4821142
sequencing method	Illumina HiSeq2500
taxonomic identity marker	multi-marker approach (GTDB-tk v1.03, GTDB v95)

Description: This sample represents a MAG derived from the metagenomic sample ERS4821142 and assembly ERZ1764477 - 2018-05-29_3_micron

3_20180529_Bin_20180529_Bin_53_sub_1
3_20180529_Bin_20180529_Bin_53_sub_1

biosample
10_20180426_Bin_METABAT_40_1
10_20180426_Bin_METABAT_40_1

biosample
0.2_20180508_Bin_31_sub
0.2_20180508_Bin_31_sub

biosample
0.2_20180412_Bin_139_sub_1
0.2_20180412_Bin_139_sub_1

biosample
ou07g04.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:1625622 3', mRNA se...
ou07g04.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:1625622 3', mRNA sequence
gi|3214788|gnl|dbEST|1743847|gb|AI0 .1|

Nucleotide

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