10_20180412_Bin_Bin_67_1

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Result Filters

Organism: uncultured Pseudophaeobacter sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Pseudophaeobacter; environmental samples

Attributes

collection date	2018-04-12
broad-scale environmental context	marine biome [ENVO:00000447]
local-scale environmental context	microbial feature [ENVO:00002150]
environmental medium	coastal sea water [ENVO:00002150]
geographic location	North Sea
investigation type	metagenome-assembled genome
isolation source	sea water
project name	2018 Helgoland Spring Bloom Metagenomes
sample name	10_20180412_Bin_Bin_67_1
ENA first public	2021-04-07
ENA last update	2021-04-01
ENA-CHECKLIST	ERC000047
External Id	SAMEA8498603
INSDC center alias	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC center name	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC first public	2021-04-07T01:08:08Z
INSDC last update	2021-04-01T14:55:36Z
INSDC status	public
Submitter Id	10_20180412_Bin_Bin_67_1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT v1.2.9
binning parameters	anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software	CONCOCT, refined with dastool and manually with anvi'o 6.2
completeness score	92.65
completeness software	checkM v1.1.3
contamination score	3.25
geographic location (latitude)	54.19
geographic location (longitude)	7.9
metagenomic source	marine metagenome
sample derived from	ERS4821144
sequencing method	Illumina HiSeq2500
taxonomic identity marker	multi-marker approach (GTDB-tk v1.03, GTDB v95)

Description: This sample represents a MAG derived from the metagenomic sample ERS4821144 and assembly ERZ1764450 - 2018-04-12_10_micron

10_20180412_Bin_Bin_67_1
10_20180412_Bin_Bin_67_1

biosample
10_20180412_Bin_METABAT_142_sub_1_1
10_20180412_Bin_METABAT_142_sub_1_1

biosample
0.2_20180529_Bin_145
0.2_20180529_Bin_145

biosample
0.2_20180426_Bin_64_sub_1
0.2_20180426_Bin_64_sub_1

biosample
3_20180319_Bin_METABAT_305_1
3_20180319_Bin_METABAT_305_1

biosample

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