10_20180426_Bin_173_1

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Organism: uncultured Candidatus Midichloriaceae bacterium
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Candidatus Midichloriaceae; environmental samples

Attributes

collection date	2018-04-26
broad-scale environmental context	marine biome [ENVO:00000447]
local-scale environmental context	microbial feature [ENVO:00002150]
environmental medium	coastal sea water [ENVO:00002150]
geographic location	North Sea
investigation type	metagenome-assembled genome
isolation source	sea water
project name	2018 Helgoland Spring Bloom Metagenomes
sample name	10_20180426_Bin_173_1
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2021-04-07T01:08:08Z
ENA-LAST-UPDATE	2021-04-01T14:55:36Z
External Id	SAMEA8498624
INSDC center name	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC first public	2021-04-07T01:08:08Z
INSDC last update	2021-04-01T14:55:36Z
INSDC status	public
Submitter Id	10_20180426_Bin_173_1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT v1.2.9
binning parameters	anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software	CONCOCT, refined with dastool and manually with anvi'o 6.2
completeness score	91.21
completeness software	checkM v1.1.3
contamination score	0.0
geographic location (latitude)	54.19
geographic location (longitude)	7.9
metagenomic source	marine metagenome
sample derived from	ERS4821146
scientific_name	uncultured Candidatus Midichloriaceae bacterium
sequencing method	Illumina HiSeq2500
taxonomic identity marker	multi-marker approach (GTDB-tk v1.03, GTDB v95)

Description: This sample represents a MAG derived from the metagenomic sample ERS4821146 and assembly ERZ1764459 - 2018-04-26_10_micron

10_20180426_Bin_173_1
10_20180426_Bin_173_1

biosample
3_20180508_Bin_METABAT_63_1
3_20180508_Bin_METABAT_63_1

biosample
3_20180529_Bin_METABAT_89_1
3_20180529_Bin_METABAT_89_1

biosample
0.2_20180426_Bin_22
0.2_20180426_Bin_22

biosample
Homo sapiens REC8 mRNA, partial cds
Homo sapiens REC8 mRNA, partial cds
gi|7672350|gb|AF132734.1|

Nucleotide

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