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S1C83591_SP131

Identifiers
BioSample: SAMEA8943776; SRA: ERS6626612
Organism
uncultured Sphingomonas sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas; environmental samples
Attributes
collection date2020-10-09
broad-scale environmental contextplant associated biome
local-scale environmental contextphyllosphere
environmental mediumorganic material
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcephyllosphere_metagenome_of_Oryza sativa
project nameRecovery of metagenome-assembled genomes from 110 rice cultivars
sample nameS1C83591_SP131
ENA first public2021-08-20
ENA last update2021-08-20
ENA-CHECKLISTERC000050
External IdSAMEA8943776
INSDC center aliasINSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC center nameINSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC first public2021-08-20T20:31:33Z
INSDC last update2021-08-20T20:31:33Z
INSDC statuspublic
Submitter IdS1C83591_SP131
assembly softwareMegahit
binning parametersdefault
binning softwarevamb
completeness score98
completeness softwareCheckM
contamination score0
geographic location (latitude)N28.8
geographic location (longitude)E112.2
metagenomic sourceplant metagenome
sample derived fromERS6595539,ERS6595650,ERS6595760
sequencing methodIllumina NovaSeq 6000
BioProject
PRJEB45634 Recovery of metagenome-assembled genomes from 110 rice cultivars
Retrieve all samples from this project

Submission
EBI; 2021-09-04
Accession:
SAMEA8943776
ID:
21224794

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