S1C1_SP3

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Result Filters

Organism: uncultured Acidovorax sp.
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax; environmental samples

Attributes

collection date	2020-10-09
broad-scale environmental context	plant associated biome
local-scale environmental context	phyllosphere
environmental medium	organic material
geographic location	China
investigation type	metagenome-assembled genome
isolation source	phyllosphere_metagenome_of_Oryza sativa
project name	Recovery of metagenome-assembled genomes from 110 rice cultivars
sample name	S1C1_SP3
ENA first public	2021-08-20
ENA last update	2021-08-20
ENA-CHECKLIST	ERC000050
External Id	SAMEA8943902
INSDC center alias	INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC center name	INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC first public	2021-08-20T20:31:33Z
INSDC last update	2021-08-20T20:31:33Z
INSDC status	public
Submitter Id	S1C1_SP3
assembly software	Megahit
binning parameters	default
binning software	vamb
completeness score	96
completeness software	CheckM
contamination score	2
geographic location (latitude)	N28.8
geographic location (longitude)	E112.2
metagenomic source	plant metagenome
sample derived from	ERS6595503,ERS6595614,ERS6595724
sequencing method	Illumina NovaSeq 6000

BioProject: PRJEB45634 Recovery of metagenome-assembled genomes from 110 rice cultivars
Retrieve all samples from this project

S1C1_SP3
S1C1_SP3

biosample
S3C126_SP123
S3C126_SP123

biosample
SP285_1_metabat2_genome_mining.11
SP285_1_metabat2_genome_mining.11

biosample
S3C1086_SP112
S3C1086_SP112

biosample
yy76e02.r1 Soares_multiple_sclerosis_2NbHMSP Homo sapiens cDNA clone IMAGE:27948...
yy76e02.r1 Soares_multiple_sclerosis_2NbHMSP Homo sapiens cDNA clone IMAGE:279482 5', mRNA sequence
gi|1186761|gnl|dbEST|451124|gb|N455

Nucleotide

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