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maxbin_SP71_1.009_cleaned

Identifiers
BioSample: SAMEA8943930; SRA: ERS6626766
Organism
uncultured Agrobacterium sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; environmental samples
Attributes
collection date2020-10-09
broad-scale environmental contextplant associated biome
local-scale environmental contextphyllosphere
environmental mediumorganic material
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcephyllosphere_metagenome_of_Oryza sativa
project nameRecovery of metagenome-assembled genomes from 110 rice cultivars
sample namemaxbin_SP71_1.009_cleaned
ENA first public2021-08-20
ENA last update2021-08-20
ENA-CHECKLISTERC000050
External IdSAMEA8943930
INSDC center aliasINSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC center nameINSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC first public2021-08-20T20:31:33Z
INSDC last update2021-08-20T20:31:33Z
INSDC statuspublic
Submitter Idmaxbin_SP71_1.009_cleaned
assembly softwareMegahit
binning parametersdefault
binning softwaremaxbin
completeness score93
completeness softwareCheckM
contamination score3
geographic location (latitude)N28.8
geographic location (longitude)E112.2
metagenomic sourceplant metagenome
sample derived fromERS6595519
sequencing methodIllumina NovaSeq 6000
BioProject
PRJEB45634 Recovery of metagenome-assembled genomes from 110 rice cultivars
Retrieve all samples from this project

Submission
EBI; 2021-09-04
Accession:
SAMEA8943930
ID:
21224932

BioProject Nucleotide

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