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SP128_1_metabat2_genome_mining.6

Identifiers
BioSample: SAMEA8944135; SRA: ERS6626971
Organism
uncultured Agrobacterium sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; environmental samples
Attributes
collection date2020-10-09
broad-scale environmental contextplant associated biome
local-scale environmental contextphyllosphere
environmental mediumorganic material
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcephyllosphere_metagenome_of_Oryza sativa
project nameRecovery of metagenome-assembled genomes from 110 rice cultivars
sample nameSP128_1_metabat2_genome_mining.6
ENA first public2021-08-20
ENA last update2021-08-20
ENA-CHECKLISTERC000050
External IdSAMEA8944135
INSDC center aliasINSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC center nameINSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC first public2021-08-20T20:31:33Z
INSDC last update2021-08-20T20:31:33Z
INSDC statuspublic
Submitter IdSP128_1_metabat2_genome_mining.6
assembly softwareMegahit
binning parametersdefault
binning softwaremetabat2
completeness score66
completeness softwareCheckM
contamination score9
geographic location (latitude)N28.8
geographic location (longitude)E112.2
metagenomic sourceplant metagenome
sample derived fromERS6595538
sequencing methodIllumina NovaSeq 6000
BioProject
PRJEB45634 Recovery of metagenome-assembled genomes from 110 rice cultivars
Retrieve all samples from this project

Submission
EBI; 2021-09-04
Accession:
SAMEA8944135
ID:
21225120

BioProject Nucleotide

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