SP3_3_metabat2_genome_mining.12

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Result Filters

Organism: uncultured Pseudomonas sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; environmental samples

Attributes

collection date	2020-10-09
broad-scale environmental context	plant associated biome
local-scale environmental context	phyllosphere
environmental medium	organic material
geographic location	China
investigation type	metagenome-assembled genome
isolation source	phyllosphere_metagenome_of_Oryza sativa
project name	Recovery of metagenome-assembled genomes from 110 rice cultivars
sample name	SP3_3_metabat2_genome_mining.12
ENA first public	2021-08-20
ENA last update	2021-08-20
ENA-CHECKLIST	ERC000050
External Id	SAMEA8944488
INSDC center alias	INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC center name	INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC first public	2021-08-20T20:31:33Z
INSDC last update	2021-08-20T20:31:33Z
INSDC status	public
Submitter Id	SP3_3_metabat2_genome_mining.12
assembly software	Megahit
binning parameters	default
binning software	metabat2
completeness score	75
completeness software	CheckM
contamination score	3
geographic location (latitude)	N28.8
geographic location (longitude)	E112.2
metagenomic source	plant metagenome
sample derived from	ERS6595724
sequencing method	Illumina NovaSeq 6000

BioProject: PRJEB45634 Recovery of metagenome-assembled genomes from 110 rice cultivars
Retrieve all samples from this project

SP3_3_metabat2_genome_mining.12
SP3_3_metabat2_genome_mining.12

biosample
SP309_3_metabat2_genome_mining.19
SP309_3_metabat2_genome_mining.19

biosample
SP238_3_metabat2_genome_mining.52
SP238_3_metabat2_genome_mining.52

biosample
S1C7250_SP286
S1C7250_SP286

biosample
uo02f06.x1 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:2582243 3', mRNA sequence
uo02f06.x1 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:2582243 3', mRNA sequence
gi|6515098|gnl|dbEST|3554419|gb|AW2 .1|

Nucleotide

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