SP238_2_metabat2_genome_mining.24

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Sphingomonas sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas; environmental samples

Attributes

collection date	2020-10-09
broad-scale environmental context	plant associated biome
local-scale environmental context	phyllosphere
environmental medium	organic material
geographic location	China
investigation type	metagenome-assembled genome
isolation source	phyllosphere_metagenome_of_Oryza sativa
project name	Recovery of metagenome-assembled genomes from 110 rice cultivars
sample name	SP238_2_metabat2_genome_mining.24
ENA first public	2021-08-20
ENA last update	2021-08-20
ENA-CHECKLIST	ERC000050
External Id	SAMEA8944504
INSDC center alias	INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC center name	INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC first public	2021-08-20T20:31:33Z
INSDC last update	2021-08-20T20:31:33Z
INSDC status	public
Submitter Id	SP238_2_metabat2_genome_mining.24
assembly software	Megahit
binning parameters	default
binning software	metabat2
completeness score	80
completeness software	CheckM
contamination score	1
geographic location (latitude)	N28.8
geographic location (longitude)	E112.2
metagenomic source	plant metagenome
sample derived from	ERS6595683
sequencing method	Illumina NovaSeq 6000