Metagenome-assembled genome: SRR4030075_bin.46_Met... - BioSample

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Result Filters

Organism: uncultured bacterium
cellular organisms; Bacteria; environmental samples

Attributes

collection date	2011-12-16
broad-scale environmental context	aquatic
local-scale environmental context	marine
environmental medium	water
geographic location	Puerto Rico
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Marine microbial community from La Parguera, Puerto Rico - BB Mangrove A Liquid metagenome
sample name	SRR4030075_bin.46_MetaBAT_v2.12.1_MAG
ENA first public	2021-09-16
ENA last update	2021-09-16
ENA-CHECKLIST	ERC000047
External Id	SAMEA9693927
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-16T16:25:22Z
INSDC last update	2021-09-16T16:25:22Z
INSDC status	public
Submitter Id	SRR4030075_bin.46_MetaBAT_v2.12.1_MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	MetaBAT v2.12.1
broker name	EMG broker account, EMBL-EBI
completeness score	96.77
completeness software	CheckM
contamination score	2.15
geographic location (latitude)	17.966667
geographic location (longitude)	-67.0
metagenomic source	marine metagenome
sample derived from	SAMN05518592
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR4030075 of study SRP082094.

BioProject: PRJEB37807 Uncultured novel prokaryotic genomes associated with with aquatic environments
Retrieve all samples from this project

Metagenome-assembled genome: SRR4030075_bin.46_MetaBAT_v2.12.1_MAG
Metagenome-assembled genome: SRR4030075_bin.46_MetaBAT_v2.12.1_MAG

biosample
Metagenome-assembled genome: ERR599138_bin.78_MetaBAT_v2.12.1_MAG
Metagenome-assembled genome: ERR599138_bin.78_MetaBAT_v2.12.1_MAG

biosample
Metagenome-assembled genome: ERR598963_bin.58_MetaBAT_v2.12.1_MAG
Metagenome-assembled genome: ERR598963_bin.58_MetaBAT_v2.12.1_MAG

biosample
Nostoc sp. P1430 16S ribosomal RNA gene, partial sequence
Nostoc sp. P1430 16S ribosomal RNA gene, partial sequence
gi|666666855|gb|KM005734.1|

Nucleotide
Peltigera ponojensis strain HOB020708-70-1-4 18S ribosomal RNA gene, partial seq...
Peltigera ponojensis strain HOB020708-70-1-4 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
gi|255347374|gb|FJ709040.1|

Nucleotide

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