Metagenome-assembled genome: SRR3933263_bin.5_Meta... - BioSample

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Organism: uncultured Oleiphilaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Oleiphilaceae; environmental samples

Attributes

collection date	2013-11-01
broad-scale environmental context	aquatic
local-scale environmental context	marine
environmental medium	water
geographic location	Canada
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	ESRF shotgun metagenomics project
sample name	SRR3933263_bin.5_MetaBAT_v2.12.1_MAG
ENA first public	2021-09-16
ENA last update	2021-09-16
ENA-CHECKLIST	ERC000047
External Id	SAMEA9694074
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-16T16:25:22Z
INSDC last update	2021-09-16T16:25:22Z
INSDC status	public
Submitter Id	SRR3933263_bin.5_MetaBAT_v2.12.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	MetaBAT v2.12.1
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	1.29
geographic location (latitude)	47.0
geographic location (longitude)	-48.471
metagenomic source	marine metagenome
sample derived from	SAMN05416856
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3933263 of study SRP079000.

BioProject: PRJEB37807 Uncultured novel prokaryotic genomes associated with with aquatic environments
Retrieve all samples from this project

Metagenome-assembled genome: SRR3933263_bin.5_MetaBAT_v2.12.1_MAG
Metagenome-assembled genome: SRR3933263_bin.5_MetaBAT_v2.12.1_MAG

biosample
Metagenome-assembled genome: ERR599164_bin.23_MetaBAT_v2.12.1_MAG
Metagenome-assembled genome: ERR599164_bin.23_MetaBAT_v2.12.1_MAG

biosample
Mus musculus DEAH-box helicase 32 (putative) (Dhx32), transcript variant 3, mRNA
Mus musculus DEAH-box helicase 32 (putative) (Dhx32), transcript variant 3, mRNA
gi|2214414572|ref|NM_001286031.2|

Nucleotide
Rattus norvegicus ubiquitin-like 7 (Ubl7), transcript variant 10, mRNA
Rattus norvegicus ubiquitin-like 7 (Ubl7), transcript variant 10, mRNA
gi|2717371499|ref|NM_001429280.1|

Nucleotide
Apristurus nasutus isolate APRNAS-01-2018 cytochrome oxidase subunit I gene, par...
Apristurus nasutus isolate APRNAS-01-2018 cytochrome oxidase subunit I gene, partial cds; mitochondrial
gi|1785997573|gb|MK990527.1|

Nucleotide

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