Metagenome-assembled genome: ERR599138_bin.78_Meta... - BioSample

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Result Filters

Organism: uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; environmental samples

Attributes

collection date	2010-04-19
broad-scale environmental context	aquatic
local-scale environmental context	marine
environmental medium	water
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
sample name	ERR599138_bin.78_MetaBAT_v2.12.1_MAG
ENA first public	2021-09-16
ENA last update	2021-09-16
ENA-CHECKLIST	ERC000047
External Id	SAMEA9694476
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-16T16:25:22Z
INSDC last update	2021-09-16T16:25:22Z
INSDC status	public
Submitter Id	ERR599138_bin.78_MetaBAT_v2.12.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	not provided
binning parameters	Default
binning software	MetaBAT v2.12.1
broker name	EMG broker account, EMBL-EBI
completeness score	54.66
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	-9.3921
geographic location (longitude)	66.4228
metagenomic source	marine metagenome
sample derived from	SAMEA2620404
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR599138 of study ERP001736.

BioProject: PRJEB37807 Uncultured novel prokaryotic genomes associated with with aquatic environments
Retrieve all samples from this project

Metagenome-assembled genome: ERR599138_bin.78_MetaBAT_v2.12.1_MAG
Metagenome-assembled genome: ERR599138_bin.78_MetaBAT_v2.12.1_MAG

biosample
Metagenome-assembled genome: ERR598963_bin.58_MetaBAT_v2.12.1_MAG
Metagenome-assembled genome: ERR598963_bin.58_MetaBAT_v2.12.1_MAG

biosample
Nostoc sp. P1430 16S ribosomal RNA gene, partial sequence
Nostoc sp. P1430 16S ribosomal RNA gene, partial sequence
gi|666666855|gb|KM005734.1|

Nucleotide
Peltigera ponojensis strain HOB020708-70-1-4 18S ribosomal RNA gene, partial seq...
Peltigera ponojensis strain HOB020708-70-1-4 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
gi|255347374|gb|FJ709040.1|

Nucleotide
Caenorhabditis elegans Helix-loop-helix protein 30 (hlh-30), mRNA
Caenorhabditis elegans Helix-loop-helix protein 30 (hlh-30), mRNA
gi|1831512722|ref|NM_001028243.3|

Nucleotide

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