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Sippewissett salt marsh cable garden enrichment, filament US4

Identifiers
BioSample: SAMN03420865; Sample name: Sippewissett salt marsh cable garden enrichment, filament US4
Organism
Desulfobulbus sp. US4
cellular organisms; Bacteria; Thermodesulfobacteriota; Desulfobulbia; Desulfobulbales; Desulfobulbaceae; Desulfobulbus; unclassified Desulfobulbus
Package
Microbe; version 1.0
Attributes
broad-scale environmental contextsalt marsh
isolation source1 filament amplified by MDA; Sippewissett salt marsh cable garden enrichment
collected byCenter for Geomicrobiology, Aarhus University
latitude and longitude41.575950 N 70.635879 W
depth5-20cm
collection date2012-08-15
sample typesingle cell
isolateUS4
geographic locationUSA: Sippewissett salt marsh, Falmouth, MA
Description

Single (Desulfobulbus) filament isolated with glass capillary hooks from Sippewisset salt marsh cable garden enrichment (Larsen at al., Environ Microbiol Rep (2015), 7: 175-179). DNA of filament was amplified using GenomePlex single cell amplification kit and sequenced using IonTorrent PGM. Genomic information of filament was extracted from resulting low-complexity metagenome via phylogenetic and kmer-based binning.

BioProject
PRJNA278504 Bacteria
Retrieve all samples from this project

Submission
Aarhus University, Lars Schreiber; 2015-03-17
Accession:
SAMN03420865
ID:
3420865

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