Pathogen: clinical or host-associated sample from ... - BioSample

Pathogen: clinical or host-associated sample from Escherichia coli

Identifiers: BioSample: SAMN03892121; Sample name: 0000-0051-1881; SRA: SRS1016969

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

isolate	8
collected by	Brigham and Women's Hospital
collection date	2014
geographic location	USA:Boston
host	Homo sapiens
host disease	Missing
isolation source	blood
latitude and longitude	Missing
host age	60
host sex	female
host subject id	Ecoli-02

BioProject: PRJNA278886
Retrieve all samples from this project

Submission: Brigham & Women's Hospital, Xiaomin Zhao; 2015-07-21

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
amikacin	susceptible	==	16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
amikacin	resistant	==	14	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
amoxicillin-clavulanic acid	resistant	>=	32/16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ampicillin	resistant	==	6	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
ampicillin	susceptible	>=	32	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
aztreonam	resistant	==	6	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
amoxicillin-clavulanic acid	resistant	==	8	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
ceftazidime	resistant	==	6	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
cefalexin	resistant	==	6	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
cefazolin	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
cefepime	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
cefoxitin	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ceftazidime	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ceftriaxone	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
chloramphenicol	susceptible	==	19	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
ciprofloxacin	resistant	==	6	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
ciprofloxacin	resistant	>=	4	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
colistin	susceptible	==	16	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
ceftriaxone	resistant	==	6	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
cefotetan	intermediate	==	14	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
ertapenem	resistant	==	8	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
ertapenem	resistant	>=	8	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
cefepime	resistant	==	6	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
gentamicin	susceptible	==	20	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
gentamicin	susceptible	<=	1	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
imipenem	susceptible	==	24	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
levofloxacin	resistant	==	6	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
levofloxacin	resistant	>=	8	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
meropenem	resistant	==	15	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
meropenem	intermediate	==	2	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
piperacillin	resistant	==	6	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
sulbactam	resistant	==	10	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
trimethoprim-sulfamethoxazole	resistant	==	6	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
tetracycline	resistant	==	6	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
tetracycline	resistant	>=	16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
tobramycin	resistant	==	6	mm	disk diffusion	missing	Becton Dickinson	missing	CLSI
tobramycin	resistant	>=	16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
trimethoprim-sulfamethoxazole	resistant	>=	16/304	mg/L	MIC	Vitek	Biomérieux	missing	CLSI

Accession:: SAMN03892121
ID:: 3892121

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Pathogen: clinical or host-associated sample from Escherichia coli

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