Uncultivated Sphingobacterium sp. UBA3519 genome r... - BioSample - NCBI

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Uncultivated Sphingobacterium sp. UBA3519 genome recovered from SRX822835

Identifiers: BioSample: SAMN06455535; Sample name: Sphingobacterium sp. UBA3519; SRA: SRS2039244

Organism: Sphingobacterium sp. UBA3519
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium; unclassified Sphingobacterium

Package: Microbe; version 1.0

Attributes

collection date	not applicable
geographic location	USA:New York City
isolate	UBA3519
isolation source	metal/plastic
metagenome source	terrestrial metagenome
sample type	metagenomic assembly
subsource note	Genome binned from sequencing reads available in SRX822835 metagenome
assembly_method	CLC de novo assembler
assembly_method_version	4.4.1
completeness_estimated	100.00%
contamination_estimated	2.38%
environmental_sample	true
genome_coverage	27.05
mapping_method	BWA (BWA-MEM)
mapping_method_version	0.7.12-r1039
metagenomic	true
quality_assessment_method	CheckM
quality_assessment_method_version	1.0.6
value	This BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749452.

Description: Uncultivated genome recovered from an assembly of the SRX822835 metagenome.

BioProject: PRJNA348753 metagenomes
Retrieve all samples from this project

Submission: University of Queensland, Donovan Parks; 2017-02-27

Accession:: SAMN06455535
ID:: 6455535

BioProject SRA Nucleotide

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Uncultivated Sphingobacterium sp. UBA3519 genome recovered from SRX822835
Uncultivated Sphingobacterium sp. UBA3519 genome recovered from SRX822835

biosample
MAG TPA: hypothetical protein [Bacteriophage sp.]
MAG TPA: hypothetical protein [Bacteriophage sp.]
gi|2059577504|tpg|DAW44620.1|

Protein
MAG TPA_asm: Flavobacteriaceae bacterium UBA4432, whole genome shotgun sequencin...
MAG TPA_asm: Flavobacteriaceae bacterium UBA4432, whole genome shotgun sequencing project
gi|1247200619|tpg|DGPU00000000.1|DG 00000

Nucleotide
Homo sapiens NADH:ubiquinone oxidoreductase subunit V3 (NDUFV3), transcript vari...
Homo sapiens NADH:ubiquinone oxidoreductase subunit V3 (NDUFV3), transcript variant 1, mRNA; nuclear gene for mitochondrial product
gi|1519241697|ref|NM_021075.4|

Nucleotide
Gene Links for GEO Profiles (Select 131584516) (1)
Gene

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