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TARA_B100001123; TARA_20110809T1708Z_125_Combined-EVENTS_CAST_MB_X_(140 m)_BACT_NUC-RNA(10L-or-10min)_W0.22-3_TARA_B100001123

Identifiers
BioSample: SAMN07286220; Sample name: Alphaproteobacteria bacterium MarineAlpha6_Bin6
Organism
Alphaproteobacteria bacterium MarineAlpha6_Bin6
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; unclassified Alphaproteobacteria
Package
Microbe; version 1.0
Attributes
isolation sourcesaline water including plankton
collection date2011-08-09
geographic locationPacific Ocean: South Pacific Ocean
latitude and longitude8.8999 S 142.5461 W
isolateMarineAlpha6_Bin6
depth140 m
sample typemetagenomic assembly
metagenome sourcemarine metagenome
temperature23.706525
broad-scale environmental contextmarine biome (ENVO:00000447)
collected byTara Oceans
noteThis BioSample is a metagenomic assembly obtained from the marine metagenome BioSample: SAMEA2622837.
environmental_sampleTRUE
metagenomicTRUE
Description

This sample (TARA_B100001123) was collected during the Tara Oceans expedition (2009-2013) at station TARA_125 (latitudeN=-8.8999, longitudeE=-142.5461) on date/time=2011-08-09T17:05:33, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 140-140 m, targeting a marine epipelagic mixed layer (ENVO:xxxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100001124.

BioProject
PRJNA390581 marine metagenome
Retrieve all samples from this project

Submission
Uppsala University, Joran Martijn; 2017-06-28
Accession:
SAMN07286220
ID:
7286220

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