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Pathogen: environmental/food/other sample from Escherichia coli

Identifiers
BioSample: SAMN08724616; Sample name: EcRM9322; SRA: SRS3771858
Organism
Escherichia coli O111 str. RM9322
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; Escherichia coli O111
Package
Pathogen: environmental/food/other; version 1.0
Attributes
strainRM9322
collected byUSDA ARS PSM
collection date2009-07
geographic locationUSA: Salinas, California
isolation sourceCreek
latitude and longitude36.68 N 121.67 W
pathotypeSTEC
serotypeO111
Description

The rise in foodborne-related outbreaks of non O157 shiga-toxin producing E. coli (STECs) emphasizes the importance of developing improved methods to rapidly detect and characterize STECs. The major serovars of STEC associated with illness have been O26, O111, O103, O121, O43, and O145, accounting for 25-50% of human illness caused by STECs and, in some cases, severe illness comparable to illness caused by E. coli O157:H7. Sequencing of STECs from the agriculturally important region of the California central coast will address the diversity of genomic content and physiology of STECs compared to E. coli O157.

BioProject
PRJNA69929 Escherichia coli O111 str. RM9322
Retrieve all samples from this project

Submission
United States Department of Agriculture, Agricultural Research Service, Craig Parker; 2018-03-16
Accession:
SAMN08724616
ID:
8724616

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