Microbe sample from Alphaproteobacteria bacterium - BioSample - NCBI

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Microbe sample from Alphaproteobacteria bacterium

Identifiers: BioSample: SAMN09926325; Sample name: Uncultivated Alphaproteobacteria bacterium SZUA-1116 genome recovered from SRR2046235 SRR2046236 SRR2046222; SRA: SRS3745492

Organism: Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; unclassified Alphaproteobacteria

Package: Microbe; version 1.0

Attributes

isolate	SZUA-1116
isolation source	Dilute Hydrothermal Plume
collection date	2012-01-18
geographic location	Atlantic Ocean:Mid Cayman Rise
sample type	metagenomic assembly
latitude and longitude	18.37636666 N 81.79808333 W
derived from	This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR2046235 SRR2046236 SRR2046222
metagenome source	hydrothermal vent metagenome
assembly_method_and_version	MEGAHIT v1.1.2
completeness_estimated	77.38
contamination_estimated	7.75
quality_assessment_method_and_version	CheckM v1.0.7
environmental-sample	true
genome_coverage	11.51
mapping_method_and_version	Bowtie 2 v2.2.8
metagenomic	true

BioProject: PRJNA488180 hydrothermal vent metagenome
Retrieve all samples from this project

Submission: The University of Hong Kong, Zhichao Zhou; 2018-08-28

Accession:: SAMN09926325
ID:: 9926325

BioProject SRA Nucleotide

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