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Microbe sample from Gammaproteobacteria bacterium

Identifiers
BioSample: SAMN09926353; Sample name: Uncultivated Gammaproteobacteria bacterium SZUA-1159 genome recovered from SRR2046238 SRR2046237 SRR2046221; SRA: SRS3745319
Organism
Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; unclassified Gammaproteobacteria
Package
Microbe; version 1.0
Attributes
isolateSZUA-1159
isolation sourceHydrothermal Plume
collection date2012-01-21
geographic locationAtlantic Ocean:Mid Cayman Rise
sample typemetagenomic assembly
latitude and longitude18.54650166 N 81.71823333 W
derived fromThis BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR2046238 SRR2046237 SRR2046221
metagenome sourcehydrothermal vent metagenome
assembly_method_and_versionMEGAHIT v1.1.2
completeness_estimated95.43
contamination_estimated3.96
quality_assessment_method_and_versionCheckM v1.0.7
environmental-sampletrue
genome_coverage55.29
mapping_method_and_versionBowtie 2 v2.2.8
metagenomictrue
BioProject
PRJNA488180 hydrothermal vent metagenome
Retrieve all samples from this project

Submission
The University of Hong Kong, Zhichao Zhou; 2018-08-28
Accession:
SAMN09926353
ID:
9926353

BioProject SRA Nucleotide

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