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Microbe sample from Alphaproteobacteria bacterium

Identifiers
BioSample: SAMN09926395; Sample name: Uncultivated Alphaproteobacteria bacterium SZUA-1233 genome recovered from SRR1217367 SRR1217459 SRR1217564 SRR1217566; SRA: SRS3745473
Organism
Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; unclassified Alphaproteobacteria
Package
Microbe; version 1.0
Attributes
isolateSZUA-1233
isolation sourceKilo Moana Hydrothermal plume 60m
collection date2009-06-15
geographic locationPacific Ocean:Lau Basin
sample typemetagenomic assembly
latitude and longitude20.05382503 S 176.13358938 W
derived fromThis BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR1217367 SRR1217459 SRR1217564 SRR1217566
metagenome sourcehydrothermal vent metagenome
assembly_method_and_versionMEGAHIT v1.1.2
completeness_estimated88.51
contamination_estimated5.07
quality_assessment_method_and_versionCheckM v1.0.7
environmental-sampletrue
genome_coverage4.57
mapping_method_and_versionBowtie 2 v2.2.8
metagenomictrue
BioProject
PRJNA488180 hydrothermal vent metagenome
Retrieve all samples from this project

Submission
The University of Hong Kong, Zhichao Zhou; 2018-08-28
Accession:
SAMN09926395
ID:
9926395

BioProject SRA Nucleotide

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