Microbe sample from Pelagibacteraceae bacterium - BioSample - NCBI

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Microbe sample from Pelagibacteraceae bacterium

Identifiers: BioSample: SAMN09926432; Sample name: Uncultivated Pelagibacteraceae bacterium SZUA-1315 genome recovered from SRR1217460 SRR1217463 SRR1217565; SRA: SRS3745339

Organism: Pelagibacteraceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Candidatus Pelagibacterales; Candidatus Pelagibacteraceae; unclassified Pelagibacteraceae

Package: Microbe; version 1.0

Attributes

isolate	SZUA-1315
isolation source	Abe hydrothermal plume 200m
collection date	2009-05-25
geographic location	Pacific Ocean:Lau Basin
sample type	metagenomic assembly
latitude and longitude	20.76121471 S 176.19057363 W
derived from	This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR1217460 SRR1217463 SRR1217565
metagenome source	hydrothermal vent metagenome
assembly_method_and_version	MEGAHIT v1.1.2
completeness_estimated	54.17
contamination_estimated	7.23
quality_assessment_method_and_version	CheckM v1.0.7
environmental-sample	true
genome_coverage	57.55
mapping_method_and_version	Bowtie 2 v2.2.8
metagenomic	true

BioProject: PRJNA488180 hydrothermal vent metagenome
Retrieve all samples from this project

Submission: The University of Hong Kong, Zhichao Zhou; 2018-08-28

Accession:: SAMN09926432
ID:: 9926432

BioProject SRA Nucleotide

Supplemental Content

Related information

BioProject
BioProject links
SRA
Links to SRA experiments
Nucleotide
Nucleotide links
Assembly
Assembly
Taxonomy
Links to Taxonomy

Recent activity

Clear Turn Off Turn On

Microbe sample from Pelagibacteraceae bacterium
Microbe sample from Pelagibacteraceae bacterium

biosample
Microbe sample from Candidatus Paceibacterota bacterium
Microbe sample from Candidatus Paceibacterota bacterium

biosample
Invertebrate sample from Mytilus galloprovincialis
Invertebrate sample from Mytilus galloprovincialis

biosample
SAMN37297026 (1)
SRA
MAG TPA_asm: Methanobacteriota archaeon isolate SZUA-1473, whole genome shotgun ...
MAG TPA_asm: Methanobacteriota archaeon isolate SZUA-1473, whole genome shotgun sequencing project
gi|1935569526|tpg|DQUQ00000000.1|DQ 00000

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

You are here: NCBI > DNA & RNA > BioSample