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MIMAG Metagenome-assembled Genome sample from Caldisericum sp.

Identifiers
BioSample: SAMN20928785; Sample name: GA_180221_E-1-2_metaspades_Caldisericum_37_73
Organism
Caldisericum sp.
cellular organisms; Bacteria; Caldisericota/Cryosericota group; Caldisericota; Caldisericia; Caldisericales; Caldisericaceae; Caldisericum; unclassified Caldisericum
Package
MIMAG: metagenome-assembled genome, water; version 6.0
Attributes
depth351 m
isolation sourcegroundwater from cold water geyser, filtered on 0.1um pore size filters
collection date2018-02-21
geographic locationGermany: Volcanic Eifel, Andernach
latitude and longitude50.448588 N 7.375355 E
isolate name aliasGA_180221_E-1-2_metaspades_Caldisericum_37_73
broad-scale environmental contextgroundwater|terrestrial subsurface|cold water geyser
local-scale environmental contextcold water geyser|geyser eruption
environmental mediumgroundwater
dissolved organic carbon1.39 (0.31) mg/L
potassium3.15 (0.86) mM
sulfate4.98 (0.39) mM
calcium5.26 (0.21) mM
chloride70.58 (7.26) mM
sodium73.05 (2.28) mM
magnesium9.05 (0.27)
nitrateBDL
phosphateBDL
sulfideBDL
chemical administrationNone
conductivity12800-13600 S
dissolved carbon dioxide5700 mg/L
organism count3.5e10^6cells/mL total cells; eFM using DAPI
oxygenation status of sampleanaerobic
pH6.8
reference for biomaterialhttps://www.biorxiv.org/content/10.1101/2020.03.07.980714v3.full.pdf
sample collection device or method0.1 um pore size teflon filters
sample material processingDNA Powersoil max kit followed by EtOH precipitation with Glycogen carrier
sample size30 L of filtered volume; 1/2 of filter was used for extraction
sample storage duration< 1 week
sample storage location- on dry ice (field) or in 80 C fridge (lab)
sample storage temperature-80 C
sample volume or weight for DNA extraction~ 15 L (1/2 of a filter)
size fraction selected0.1 m
temperature18 C
total depth of water column351 m
total iron486.11 (39.06) M
sample typemetagenomic assembly
metagenome sourceaquifer metagenome
derived fromThis BioSample is a metagenomic assembly obtained from the aquifer metagenome BioSample: SAMN14680029
isolateGA_180221_E-1-2-MAG-37_73
metagenomic1
environmental-sample1
Description

groundwater sample from cold water geyser eruptions; erupting water was collected in bleach-sterilized containers and from there filtered on teflon filters with 0.1 um pore size

Keywords: GSC:MIxS;MIMAG:6.0

BioProject
PRJNA627655 aquifer metagenome
Retrieve all samples from this project

Submission
University Duisburg-Essen, Till Bornemann; 2021-08-23
Accession:
SAMN20928785
ID:
20928785

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