Olsenella MAG, UW_MP_ATO3_6

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Identifiers: BioSample: SAMN22412116; Sample name: UW_MP_ATO3_6

Organism: Olsenella sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella; unclassified Olsenella

Package: MIMAG: metagenome-assembled genome; version 6.0

Attributes

collection date	2018-12-15
geographic location	USA: Madison, WI
latitude and longitude	43.033933 N 89.356452 W
isolation source	anaerobic bioreactor effluent
isolate	UW_MP_ATO3_6
broad-scale environmental context	bioreactor [ENVO:00002123]
local-scale environmental context	anaerobic bioreactor [ENVO:00002124]
environmental medium	biological waste material [ENVO:01000373]
altitude	268 m
ammonium	173.94 milligram per liter
dissolved oxygen	0 micromole per kilogram
pH	5.5
phosphate	253.13 milligram per liter
reference for biomaterial	3300042973_4
relationship to oxygen	anaerobe
sample collection device or method	Syringe
sample material processing	Biomass centrifuged 10 min 10,000xg, aliquot frozen for DNA extraction
sample size	2 milliliter
sample storage location	Freezer
sample storage temperature	-80 degree Celcius
source material identifiers	CSTR_060
temperature	35 degree Celcius
sample type	metagenomic assembly
metagenome source	bioreactor sludge metagenome
derived from	SAMN18243139
metagenomic	1
environmental-sample	1

Description

Improved metagenome assembled genome from a ultra-filtered-milk-permeate fermenting bioreactor. This bioreactor was operated as a continuously stirred tank reactor with a six day solids and hydraulic retention time, under anaerobic conditions and was fed ultra-filtered milk permeate, ammended with 400 mg N-NH4Cl/L. This sample was from the 60 day of operation.

Keywords: GSC:MIxS;MIMAG:6.0

BioProject: PRJNA708968 bioreactor sludge metagenome
Retrieve all samples from this project

Submission: University of Wisconsin-Madison, Kevin Myers; 2021-10-19

Accession:: SAMN22412116
ID:: 22412116

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Olsenella MAG, UW_MP_ATO3_6
Olsenella MAG, UW_MP_ATO3_6

biosample
SAMN13991591 (1)
SRA
M.musculus SOX2 gene
M.musculus SOX2 gene
gi|1209429|emb|X94127.1|

Nucleotide
Homo sapiens zinc finger protein 343 (ZNF343), transcript variant 1, mRNA
Homo sapiens zinc finger protein 343 (ZNF343), transcript variant 1, mRNA
gi|1653961807|ref|NM_024325.6|

Nucleotide
PREDICTED: Homo sapiens EBF family member 4 (EBF4), transcript variant X4, mRNA
PREDICTED: Homo sapiens EBF family member 4 (EBF4), transcript variant X4, mRNA
gi|2462581058|ref|XM_054323776.1|

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