MIMAG Metagenome-assembled Genome sample from Deha... - BioSample

MIMAG Metagenome-assembled Genome sample from Dehalococcoidia bacterium

Identifiers: BioSample: SAMN34042642; Sample name: CSMAG_79

Organism: Dehalococcoidia bacterium
cellular organisms; Bacteria; Bacillati; Chloroflexota; Dehalococcoidia; unclassified Dehalococcoidia

Package: MIMAG: metagenome-assembled genome, sediment; version 6.0

Attributes

isolate	CSMAG_79
collection date	not applicable
depth	not applicable
elevation	not applicable
broad-scale environmental context	not applicable
local-scale environmental context	not applicable
environmental medium	not applicable
geographic location	not applicable
isolation source	cold seep
latitude and longitude	not applicable
alkalinity	not applicable
alkyl diethers	not applicable
altitude	not applicable
aminopeptidase activity	not applicable
ammonium	not applicable
bacterial carbon production	not applicable
biomass	not applicable
bishomohopanol	not applicable
bromide	not applicable
calcium	not applicable
carbon/nitrogen ratio	not applicable
chemical administration	not applicable
chloride	not applicable
chlorophyll	not applicable
collection method	not applicable
density	not applicable
diether lipids	not applicable
dissolved carbon dioxide	not applicable
dissolved hydrogen	not applicable
dissolved inorganic carbon	not applicable
dissolved organic carbon	not applicable
dissolved organic nitrogen	not applicable
dissolved oxygen	not applicable
experimental factor	not applicable
glucosidase activity	not applicable
magnesium	not applicable
mean friction velocity	not applicable
mean peak friction velocity	not applicable
methane	not applicable
miscellaneous parameter	not applicable
n alkanes	not applicable
negative control type	not applicable
nitrate	not applicable
nitrite	not applicable
nitrogen	not applicable
Omics Observatory ID	not applicable
organic carbon	not applicable
organic matter	not applicable
organic nitrogen	not applicable
organism count	not applicable
oxygenation status of sample	not applicable
particulate organic carbon	not applicable
particle classification	not applicable
perturbation	not applicable
petroleum hydrocarbon	not applicable
pH	not applicable
phaeopigments	not applicable
phosphate	not applicable
phospholipid fatty acid	not applicable
porosity	not applicable
positive control type	not applicable
potassium	not applicable
pressure	not applicable
redox potential	not applicable
reference for biomaterial	not applicable
relationship to oxygen	not applicable
salinity	not applicable
sample collection device or method	not applicable
sample material processing	not applicable
sample size	not applicable
sample storage duration	not applicable
sample storage location	not applicable
sample storage temperature	not applicable
sample volume or weight for DNA extraction	not applicable
sediment type	not applicable
silicate	not applicable
size fraction selected	not applicable
sodium	not applicable
source material identifiers	not applicable
sulfate	not applicable
sulfide	not applicable
temperature	not applicable
tidal stage	not applicable
total carbon	not applicable
total depth of water column	not applicable
total nitrogen	not applicable
total organic carbon	not applicable
turbidity	not applicable
water content	not applicable
sample type	metagenomic assembly
metagenome source	cold seep metagenome
derived from	This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR5716301, SRR5716302, SRR5716303, SRR5716304, SRR5716305, SRR5716306, SRR5716307, SRR5716308, SRR5716309, SRR5716310, SRR5716311, SRR5716312, SRR5716313, SRR5716314
replicate	biological replicate 79
metagenomic	1
environmental-sample	1

Description

not applicable

Keywords: GSC:MIxS;MIMAG:6.0

BioProject: PRJNA950938 cold seep sediments
Retrieve all samples from this project

Submission: Third Institute of Oceanography, Ministry of Natural Resources, Yingchun Han; 2023-04-02

Accession:: SAMN34042642
ID:: 34042642

BioProject Nucleotide

BioSample

National Center for Biotechnology Information

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MIMAG Metagenome-assembled Genome sample from Dehalococcoidia bacterium

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