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Animal sample from Hydrolagus colliei (spotted ratfish) for VGP genome, sHydCol1

Identifiers
BioSample: SAMN39156054; Sample name: Animal sample from Hydrolagus colliei (spotted ratfish) for VGP genome, sHydCol1; SRA: SRS22403596
Organism
Hydrolagus colliei (spotted ratfish)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Chondrichthyes; Holocephali; Chimaeriformes; Chimaeridae; Hydrolagus
Package
Model organism or animal; version 1.0
Attributes
isolatesHydCol1
development stageadult
collection date2022-04-29
geographic locationUSA: San Juan Island, Washington
sexmale
tissueliver
biomaterial providerUniversity of Washington, Friday Harbor Labs; Karly Cohen and Gavin Naylor
collected byKarly Cohen, Friday Harbor Labs
latitude and longitude48.564472 N 123.013778 W
storage conditions-80oC
treatmentliquid nitrogen
Source IDLiver HC_08 (L)
Description

The spotted ratfish (Hydrolagus colliei) is a chimaera found in the north-eastern Pacific Ocean, often seen by divers at night in the Pacific Northwest This cartilaginous fish gets its characteristic name from a pointed rat-like tail. (modified from Wikipedia entry). This sample is from a male individual collected from San Juan Island in the San Juan Channel of Washington State, by Karly Cohen of Friday Harbor Labs, and coordinated by Gavin Naylor to be used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.

BioProjects
PRJNA1058005 Hydrolagus colliei isolate:sHydCol1
Retrieve all samples from this project

PRJNA1058004 Hydrolagus colliei isolate:sHydCol1
Retrieve all samples from this project

Submission
G10K, Erich Jarvis; 2023-12-27
Accession:
SAMN39156054
ID:
39156054

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