collection date | 2018-10-15 |
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broad-scale environmental context | marine biome [ENVO:00000447] |
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local-scale environmental context | microbial feature [ENVO:00002150] |
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environmental medium | coastal sea water [ENVO:00002150] |
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geographic location | China |
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investigation type | metagenome-assembled genome |
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isolation source | seawater |
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project name | Metagenomes of marine macroalgae, surrounding seawater and surrounding sediments |
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sample name | S1_Bin_METABAT__101 |
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ENA-CHECKLIST | ERC000011 |
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ENA-FIRST-PUBLIC | 2023-01-18 |
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ENA-LAST-UPDATE | 2023-01-18 |
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External Id | SAMEA14074186 |
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INSDC center alias | Marine College, Shandong University |
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INSDC center name | marine college, shandong university |
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INSDC first public | 2023-01-18T00:18:52Z |
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INSDC last update | 2023-01-18T00:18:52Z |
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INSDC status | public |
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Submitter Id | S1_Bin_METABAT__101 |
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assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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assembly software | MEGAHIT v1.2.9 |
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binning parameters | anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond |
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binning software | CONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2 |
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completeness score | 63.79 |
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completeness software | checkM v1.1.3 |
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contamination score | 0.07 |
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geographic location (latitude) | 37.562 |
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geographic location (longitude) | 122.121 |
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metagenomic source | marine metagenome |
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sample derived from | ERS11025025 |
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sequencing method | Illumina Nova-PE150 |
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taxonomic identity marker | multi-marker approach (GTDB-tk v1.03, GTDB v95) |
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