MAG LaPlata-1m-b_bin-393 from assembly ERS4600443

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Links from Assembly

Identifiers: BioSample: SAMEA6951350; SRA: ERS4661227

Organism: uncultured Chloracidobacterium sp.
cellular organisms; Bacteria; Acidobacteriota; Blastocatellia; Chloracidobacterium; environmental samples

Attributes

ammonium	0.024003547868507
collection date	2018-07-18
broad-scale environmental context	lentic water body
local-scale environmental context	reservoir
environmental medium	water
geographic location	Puerto Rico
investigation type	metagenome
isolation source	lake water
nitrate	0.001370859399822
oxygen	7.45
pH	8.35
project name	microbes in stratified freshwaters
sample name	LaPlata-1m-b_bin-393
temperature	30.18
total phosphorus	0.000710278589989
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:55Z
ENA-LAST-UPDATE	2020-06-18T09:06:38Z
External Id	SAMEA6951350
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:55Z
INSDC last update	2020-06-18T09:06:38Z
INSDC status	public
Submitter Id	LaPlata-1m-b_bin-393
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	60.26
completeness software	checkm
conductivity.	0.305
contamination score	1.71
geographic location (depth)	1
geographic location (latitude)	18.333333333333332
geographic location (longitude)	-66.23666666666666
gtdb_taxonomy	d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Chloracidobacteriales
metagenomic OTU	anoxic_mOTU_1052
metagenomic source	lake water metagenome
region	Bayamón
sample derived from	ERS4600443
sample owner	Sari Peura
scientific_name	uncultured Chloracidobacterium sp.
sequencing method	NovaSeq
site name	La Plata
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water