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Sample from Mannheimia varigena USDA-ARS-USMARC-1312

Identifiers
BioSample: SAMN03081507; GenBank: gb|CP006944.1
Organism
Mannheimia varigena USDA-ARS-USMARC-1312
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia varigena
Attributes
geographic locationCanada: Saskatchewan
collection date2003
strainUSDA-ARS-USMARC-1312
broad-scale environmental contextterrestrial biome
environmental packageNot available
estimated size2500000
local-scale environmental contextlivestock-associated habitat
geographic locationCanada: Saskatchewan
health statedead
investigation typebacteria_archaea
isolation and growth conditionNot collected
latitude and longitudeNot collected
environmental mediummucus
number of replicons1
pathogenicityanimal
ploidyhaploid
project nameUSMARC Bovine Respiratory Disease Pathogen Sequencing Project
reference for biomaterialNot available
hostBos taurus
annot_sourceDIYA
finishing_strategycomplete: 11X coverage: reads >= 11000
seq_methPacBio C2 P4
assemblyCelera 7.0 : Consensus accuracy of 99.993% : Quiver
BioProject
PRJNA230707 Mannheimia varigena USDA-ARS-USMARC-1312
Retrieve all samples from this project

Submission
USDA-ARS-U.S. Meat Animal Research Center, Genetics, Breeding, and Animal Health Research Unit; 2014-09-26
Accession:
SAMN03081507
ID:
3081507

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