collection date | 2017-06 |
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broad-scale environmental context | subtropical desert biome |
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local-scale environmental context | soil biocrust |
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environmental medium | soil biocrust |
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geographic location | Israel |
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investigation type | metagenome-assembled genome |
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isolation source | Biological soil crust from Avdat LTER, Negev Desert, Israel |
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project name | PRJEB36534 |
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sample name | AVDCRST_MAG55 |
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ENA-CHECKLIST | ERC000047 |
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ENA-FIRST-PUBLIC | 2020-05-01T17:08:18Z |
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ENA-LAST-UPDATE | 2020-02-06T14:13:43Z |
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External Id | SAMEA6526637 |
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INSDC center name | UNIVERSITY OF VIENNA |
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INSDC first public | 2020-05-01T17:08:18Z |
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INSDC last update | 2020-02-06T14:13:43Z |
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INSDC status | public |
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Submitter Id | AVDCRST_MAG55 |
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assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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assembly software | metaSPAdes;kmer set 21,31,41,51,61,71,81,91,101,111,121,127, otherwise default parameters |
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binning parameters | differential coverage across 5 samples, 4-mer frequencies |
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binning software | MetaBAT v. 2.12.1, MaxBin v. 2.2.4, Metawatt v. 3.5.3 summarized via DASTool v. 1.1.0 and refined in Anvi’O v. 5.2 |
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completeness score | 67.28 |
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completeness software | CheckM v.1.0.7 |
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contamination score | 1.75 |
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geographic location (latitude) | 30.786 |
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geographic location (longitude) | 34.767 |
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metagenomic source | soil crust metagenome |
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sample derived from | ERS4290232 |
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scientific_name | uncultured Rubrobacteraceae bacterium |
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sequencing method | Illumina HiSeq 2500 |
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taxonomic identity marker | Genome Taxonomy Database classifier (120 protein markers) |
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