| collection date | 2017-06 |
|---|
| broad-scale environmental context | subtropical desert biome |
|---|
| local-scale environmental context | soil biocrust |
|---|
| environmental medium | soil biocrust |
|---|
| geographic location | Israel |
|---|
| investigation type | metagenome-assembled genome |
|---|
| isolation source | Biological soil crust from Avdat LTER, Negev Desert, Israel |
|---|
| project name | PRJEB36534 |
|---|
| sample name | AVDCRST_MAG12 |
|---|
| ENA-CHECKLIST | ERC000047 |
|---|
| ENA-FIRST-PUBLIC | 2020-05-01T17:08:18Z |
|---|
| ENA-LAST-UPDATE | 2020-02-06T14:13:43Z |
|---|
| External Id | SAMEA6526594 |
|---|
| INSDC center name | UNIVERSITY OF VIENNA |
|---|
| INSDC first public | 2020-05-01T17:08:18Z |
|---|
| INSDC last update | 2020-02-06T14:13:43Z |
|---|
| INSDC status | public |
|---|
| Submitter Id | AVDCRST_MAG12 |
|---|
| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
|---|
| assembly software | metaSPAdes;kmer set 21,31,41,51,61,71,81,91,101,111,121,127, otherwise default parameters |
|---|
| binning parameters | differential coverage across 5 samples, 4-mer frequencies |
|---|
| binning software | MetaBAT v. 2.12.1, MaxBin v. 2.2.4, Metawatt v. 3.5.3 summarized via DASTool v. 1.1.0 and refined in Anvi’O v. 5.2 |
|---|
| completeness score | 73.16 |
|---|
| completeness software | CheckM v.1.0.7 |
|---|
| contamination score | 6.9 |
|---|
| geographic location (latitude) | 30.786 |
|---|
| geographic location (longitude) | 34.767 |
|---|
| metagenomic source | soil crust metagenome |
|---|
| sample derived from | ERS4290189 |
|---|
| scientific_name | uncultured Rubrobacteraceae bacterium |
|---|
| sequencing method | Illumina HiSeq 2500 |
|---|
| taxonomic identity marker | Genome Taxonomy Database classifier (120 protein markers) |
|---|