MAG Loc090721-1m_bin-430 from assembly ERS4600491

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Links from Nucleotide

Identifiers: BioSample: SAMEA6947337; SRA: ERS4657219

Organism: uncultured beta proteobacterium
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; environmental samples

Attributes

ammonium	0.022174178169522
chloride	247.8
collection date	2009-07-21
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Switzerland
investigation type	metagenome
isolation source	lake water
nitrate	0.012902206115968
nitrite	0
oxygen	13.6899876996723
project name	microbes in stratified freshwaters
sample name	Loc090721-1m_bin-430
sulfate	143.7
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:54Z
ENA-LAST-UPDATE	2020-06-18T09:03:48Z
External Id	SAMEA6947337
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:54Z
INSDC last update	2020-06-18T09:03:48Z
INSDC status	public
Submitter Id	Loc090721-1m_bin-430
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	97.25
completeness software	checkm
contamination score	0.99
ferric iron	0
ferrous iron	0
fluoride	8.8
geographic location (depth)	1
geographic location (latitude)	47.01861111111111
geographic location (longitude)	6.996666666666667
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter
iron	0
metagenomic OTU	anoxic_mOTU_0399
metagenomic source	lake water metagenome
region	Neuchâtel
sample derived from	ERS4600491
sample owner	Stefan Bertilsson
scientific_name	uncultured beta proteobacterium
sequencing method	NovaSeq
site name	Loclat
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water