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BioSample

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MAG Ki1-0-7m_bin-0950 from assembly ERS4600417

Identifiers: BioSample: SAMEA6951103; SRA: ERS4660980

Organism: uncultured Curvibacter sp.
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter; environmental samples

Attributes

ammonium	0
collection date	2018-07-24
dissolved carbon dioxide	127.2126169
dissolved organic carbon	726.019299457983
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	lake water
methane	4.076967206
nitrate	0.451577214058889
nitrite	0
oxygen	5.6
pH	5.39
phosphate	0.252707657252604
project name	microbes in stratified freshwaters
sample name	Ki1-0-7m_bin-0950
sulfate	0.211
temperature	20
total dissolved nitrogen	360
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:55Z
ENA-LAST-UPDATE	2020-06-18T09:06:35Z
External Id	SAMEA6951103
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:55Z
INSDC last update	2020-06-18T09:06:35Z
INSDC status	public
Submitter Id	Ki1-0-7m_bin-0950
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	96.7
completeness software	checkm
contamination score	3.11
ferric iron	0
ferrous iron	21.1221751
geographic location (depth)	0.7
geographic location (latitude)	67.92872222222223
geographic location (longitude)	20.361250000000002
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Curvibacter
iron	21.1221751
metagenomic OTU	anoxic_mOTU_0961
metagenomic source	lake water metagenome
region	Kiruna
sample derived from	ERS4600417
sample owner	Gaetan Martin
scientific_name	uncultured Curvibacter sp.
sequencing method	NovaSeq
site name	Ki1
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water