MAG AM-lipid-02-D5_bin-1081 from assembly ERS46003... - BioSample

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MAG AM-lipid-02-D5_bin-1081 from assembly ERS4600341

Identifiers: BioSample: SAMEA6950720; SRA: ERS4660597

Organism: Akkermansiaceae bacterium
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Akkermansiaceae; unclassified Akkermansiaceae

Attributes

ammonium	0.404124397139531
collection date	2018-08-22
dissolved carbon dioxide	270.5049998
dissolved organic carbon	1099.02004046392
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
methane	8.673010851
nitrate	0.764455712371119
nitrite	0.016449765747007
nitrogen	47.2630955185733
organic carbon	1282.19004720791
oxygen	0.26
phosphate	0.27166073154655
project name	microbes in stratified freshwaters
sample name	AM-lipid-02-D5_bin-1081
sulfate	0.662
temperature	6.5
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:55Z
ENA-LAST-UPDATE	2020-06-18T09:06:29Z
External Id	SAMEA6950720
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:55Z
INSDC last update	2020-06-18T09:06:29Z
INSDC status	public
Submitter Id	AM-lipid-02-D5_bin-1081
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	98.6
completeness software	checkm
contamination score	4.9
geographic location (depth)	3.5
geographic location (latitude)	61.20805555555556
geographic location (longitude)	25.11388888888889
gtdb_taxonomy	d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__UBA1315
metagenomic OTU	anoxic_mOTU_0265
metagenomic source	lake water metagenome
region	Evo
sample derived from	ERS4600341
sample owner	Sari Peura
scientific_name	Akkermansiaceae bacterium
sequencing method	NovaSeq
site name	Alinen Mustajärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water