MAG Ja1-D4_bin-435 from assembly ERS4600413

Identifiers: BioSample: SAMEA6948750; SRA: ERS4658630

Organism: uncultured delta proteobacterium
cellular organisms; Bacteria; delta/epsilon subdivisions; Deltaproteobacteria; environmental samples

Attributes

ammonium	0
collection date	2018-07-05
dissolved carbon dioxide	688.0372217
dissolved organic carbon	2039.84780237621
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	lake water
methane	0.321084612
nitrate	0.338682910544167
nitrite	0
oxygen	0
pH	6.58
phosphate	0.147412800064019
project name	microbes in stratified freshwaters
sample name	Ja1-D4_bin-435
sulfate	3.12
total dissolved nitrogen	730
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:55Z
ENA-LAST-UPDATE	2020-06-18T09:05:36Z
External Id	SAMEA6948750
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:55Z
INSDC last update	2020-06-18T09:05:36Z
INSDC status	public
Submitter Id	Ja1-D4_bin-435
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	80.52
completeness software	checkm
contamination score	3.23
ferric iron	156.0911298
ferrous iron	4.597900379
geographic location (depth)	2.7
geographic location (latitude)	63.34916666666667
geographic location (longitude)	14.458888888888888
gtdb_taxonomy	d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae
iron	160.6890302
metagenomic OTU	anoxic_mOTU_0682
metagenomic source	lake water metagenome
region	Jämtland
sample derived from	ERS4600413
sample owner	Gaetan Martin
scientific_name	uncultured delta proteobacterium
sequencing method	NovaSeq
site name	Lomtjärnan
swedish lake code	703480-142137
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6948750
ID:: 15260363

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MAG Ja1-D4_bin-435 from assembly ERS4600413

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