MAG AM-lipid-02-D6_bin-071 from assembly ERS4600342

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Identifiers: BioSample: SAMEA6943986; SRA: ERS4653872

Organism: Akkermansiaceae bacterium
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Akkermansiaceae; unclassified Akkermansiaceae

Attributes

ammonium	1.19186207661179
collection date	2018-08-22
dissolved carbon dioxide	113.6702608
dissolved organic carbon	1173.95322504101
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
methane	7.586540018
nitrate	1.07088310762537
nitrite	0.018636127017179
nitrogen	82.103564722597
organic carbon	1540.29323852898
oxygen	0.28
phosphate	0.014635985149213
project name	microbes in stratified freshwaters
sample name	AM-lipid-02-D6_bin-071
sulfate	0.633
temperature	5.5
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:54Z
ENA-LAST-UPDATE	2020-06-18T09:02:36Z
External Id	SAMEA6943986
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:54Z
INSDC last update	2020-06-18T09:02:36Z
INSDC status	public
Submitter Id	AM-lipid-02-D6_bin-071
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	97.28
completeness software	checkm
contamination score	4.31
geographic location (depth)	4
geographic location (latitude)	61.20805555555556
geographic location (longitude)	25.11388888888889
gtdb_taxonomy	d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__UBA1315
metagenomic OTU	anoxic_mOTU_0265
metagenomic source	lake water metagenome
region	Evo
sample derived from	ERS4600342
sample owner	Sari Peura
scientific_name	Akkermansiaceae bacterium
sequencing method	NovaSeq
site name	Alinen Mustajärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water