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Microbe sample from Dehalococcoidia bacterium

Identifiers
BioSample: SAMN09926433; Sample name: Uncultivated Dehalococcoidia bacterium SZUA-1316 genome recovered from SRR1217460 SRR1217463 SRR1217565; SRA: SRS3745338
Organism
Dehalococcoidia bacterium
cellular organisms; Bacteria; Terrabacteria group; Chloroflexota; Dehalococcoidia; unclassified Dehalococcoidia
Package
Microbe; version 1.0
Attributes
isolateSZUA-1316
isolation sourceAbe hydrothermal plume 200m
collection date2009-05-25
geographic locationPacific Ocean:Lau Basin
sample typemetagenomic assembly
latitude and longitude20.76121471 S 176.19057363 W
derived fromThis BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR1217460 SRR1217463 SRR1217565
metagenome sourcehydrothermal vent metagenome
assembly_method_and_versionMEGAHIT v1.1.2
completeness_estimated50.35
contamination_estimated1.75
quality_assessment_method_and_versionCheckM v1.0.7
environmental-sampletrue
genome_coverage10.53
mapping_method_and_versionBowtie 2 v2.2.8
metagenomictrue
BioProject
PRJNA488180 hydrothermal vent metagenome
Retrieve all samples from this project

Submission
The University of Hong Kong, Zhichao Zhou; 2018-08-28
Accession:
SAMN09926433
ID:
9926433

BioProject SRA Nucleotide

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