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Metagenome-assembled genome: SRR14474044_bin.16_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110321965; SRA: ERS12419573
Organism
Oceanisphaera avium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Oceanisphaera
Attributes
collection date2019-12-01
broad-scale environmental contextPig digestive system
local-scale environmental contextColon
environmental mediumFeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcepig gut metagenome
project nameAnalyze the bacteria and antibiotic resistance gene in pig fecal in China
sample nameSRR14474044_bin.16_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-11
ENA-LAST-UPDATE2022-07-11
External IdSAMEA110321965
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-07-11T16:41:52Z
INSDC last update2022-07-11T16:41:52Z
INSDC statuspublic
Submitter IdSRR14474044_bin.16_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score90.99
completeness softwareCheckM
contamination score0.54
geographic location (latitude)26.69
geographic location (longitude)106.59
metagenomic sourcepig gut metagenome
sample derived fromSAMN19078912
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474044 of study SRP319028.

BioProject
PRJEB52635
Retrieve all samples from this project

Submission
EBI; 2022-07-14
Accession:
SAMEA110321965
ID:
29729447

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